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Joan Carles Pons
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IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ...
Nucleic acids research 47 (D1), D678-D686, 2018
1752018
VPF-Class: Taxonomic assignment and host prediction of uncultivated viruses based on viral protein families
JC Pons, D Paez-Espino, G Riera, N Ivanova, NC Kyrpides, M Llabrés
Bioinformatics, 2021
932021
Classes of explicit phylogenetic networks and their biological and mathematical significance
S Kong, JC Pons, L Kubatko, K Wicke
Journal of Mathematical Biology 84 (6), 1-44, 2022
532022
Tree-based networks: characterisations, metrics, and support trees
JC Pons, C Semple, M Steel
Journal of mathematical biology, 1-20, 2018
252018
A reconstruction problem for a class of phylogenetic networks with lateral gene transfers
G Cardona, JC Pons, F Rosselló
Algorithms for Molecular Biology 10 (1), 28, 2015
172015
Generation of Binary Tree-Child phylogenetic networks
G Cardona, JC Pons, C Scornavacca
PLoS computational biology 15 (9), e1007347, 2019
162019
Fast algorithm for the reconciliation of gene trees and LGT networks
C Scornavacca, JCP Mayol, G Cardona
Journal of theoretical biology 418, 129-137, 2017
142017
Generation of level-k LGT Networks
JC Pons, C Scornavacca, G Cardona
IEEE/ACM transactions on computational biology and bioinformatics, 2019
92019
A polynomial invariant for a new class of phylogenetic networks
JC Pons, TM Coronado, M Hendriksen, A Francis
PloS one 17 (5), e0268181, 2022
72022
Comparison of orchard networks using their extended μ-representation
G Cardona, JC Pons, G Ribas, TM Coronado
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2024
42024
Reconstruction of LGT networks from tri-LGT-nets
G Cardona, JC Pons
Journal of Mathematical Biology, 1-24, 2017
22017
Counting Cherry Reduction Sequences in Phylogenetic Tree-Child Networks is Counting Linear Extensions
TM Coronado, JC Pons, G Riera
Bulletin of Mathematical Biology 86 (12), 146, 2024
1*2024
Generation of orchard and tree-child networks
G Cardona, G Ribas, JC Pons
Bulletin of Mathematical Biology 86 (1), 10, 2024
12024
Fence decompositions and cherry covers in non-binary phylogenetic networks
JC Pons, PV López, Y Murakami, L Van Iersel
arXiv preprint arXiv:2407.08812, 2024
2024
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Articles 1–14