Ana Abecasis

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Anne-Mieke VandammeFull professor, KU Leuven, BelgiumVerified email at uzleuven.be
Kristof TheysKU LeuvenVerified email at kuleuven.be
Andrea-Clemencia Pineda-PeñaSanofi: Global Clinical Development Vaccines; IHMT (Portugal); FIDIC (Colombia)Verified email at sanofi.com
Pieter LibinAssistant Professor, Vrije Universiteit BrusselVerified email at vub.be
Nuno Rodrigues FariaReader/Associate Professor, Imperial College, University of Oxford, University of São PauloVerified email at ic.ac.uk
Philippe LemeyFull Professor, KU LeuvenVerified email at kuleuven.be
Sonia DiasNational School of Public Health, Universidade NOVA LisboaVerified email at ensp.unl.pt
Tulio de OliveiraStellenbosch UniversityVerified email at sun.ac.za
M Rosario Oliveira MartinsUniversidade NOVA LisboaVerified email at ihmt.unl.pt
Nuno TaveiraInstituto Universitário Egas Moniz e Instituto de Investigação do MedicamentoVerified email at ff.ul.pt
Maurizio ZazziProfessor of Microbiology, University of SienaVerified email at unisi.it
Marc A. SuchardProfessor, University of California, Los AngelesVerified email at ucla.edu
Ines BártoloiMedULisboaVerified email at ff.ulisboa.pt
Ricardo ParreiraGlobal Health and Tropical Medicine (GHTM), Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa (UNL), Verified email at ihmt.unl.pt
Jurgen Vercauterenassistant professor, statistician and lecturer at KU Leuven, BELGIUMVerified email at kuleuven.be
Miguel ViveirosProfessor of Microbiology, Inst. Higiene Medicina Tropical, Universidade NOVA de Lisboa, PortugalVerified email at ihmt.unl.pt
Nowe AnnGewoon hoogleraarVerified email at vub.be
Marcio Roberto Teixeira NunesResearcher in Public Health, Evandro Chagas Institute, BrazilVerified email at iec.gov.br
Marcelo A. SoaresPesquisador Titular, Instituto Nacional do CâncerVerified email at inca.gov.br
Anna Maria GerettiKing' College LondonVerified email at kcl.ac.uk

Ana Abecasis

Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa

Verified email at ihmt.unl.pt

genomic epidemiology virology global health molecular evolution drug resistance


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Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ... Infection, genetics and evolution 19, 337-348, 2013	352	2013
HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics AB Abecasis, AMJ Wensing, D Paraskevis, J Vercauteren, K Theys, ... Retrovirology 10, 1-13, 2013	174	2013
Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution AB Abecasis, AM Vandamme, P Lemey Journal of virology 83 (24), 12917-12924, 2009	132	2009
Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form AB Abecasis, P Lemey, N Vidal, T de Oliveira, M Peeters, R Camacho, ... Journal of virology 81 (16), 8543-8551, 2007	130	2007
A genomic signature and the identification of new sporulation genes AB Abecasis, M Serrano, R Alves, L Quintais, JB Pereira-Leal, ... Journal of bacteriology 195 (9), 2101-2115, 2013	129	2013
Phylogeography of dengue virus serotype 4, Brazil, 2010–2011 MRT Nunes, NR Faria, HB Vasconcelos, DBA Medeiros, ...	107	2012
Protease mutation M89I/V is linked to therapy failure in patients infected with the HIV-1 non-B subtypes C, F or G AB Abecasis, K Deforche, J Snoeck, LT Bacheler, P McKenna, ... Aids 19 (16), 1799-1806, 2005	103	2005
Investigation of baseline susceptibility to protease inhibitors in HIV-1 subtypes C, F, G and CRF02_AG AB Abecasis, K Deforche, LT Bacheler, P McKenna, AP Carvalho, ... Antiviral therapy 11 (5), 581-589, 2006	81	2006
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable C Mavian, SK Pond, S Marini, BR Magalis, AM Vandamme, S Dellicour, ... Proceedings of the National Academy of Sciences 117 (23), 12522-12523, 2020	73	2020
Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon NR Faria, MA Suchard, A Abecasis, JD Sousa, N Ndembi, I Bonfim, ... Infection, Genetics and Evolution 12 (2), 453-460, 2012	71	2012
HIV and tuberculosis co-infection among migrants in Europe: A systematic review on the prevalence, incidence and mortality AM Tavares, I Fronteira, I Couto, D Machado, M Viveiros, AB Abecasis, ... PloS one 12 (9), e0185526, 2017	63	2017
Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe D Frentz, DAMC Van de Vijver, AB Abecasis, J Albert, O Hamouda, ... BMC Infectious Diseases 14 (1), 1-12, 2014	55	2014
VIRULIGN: fast codon-correct alignment and annotation of viral genomes PJK Libin, K Deforche, AB Abecasis, K Theys Bioinformatics 35 (10), 1763-1765, 2019	54	2019
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes V Fonseca, PJK Libin, K Theys, NR Faria, MRT Nunes, MI Restovic, ... PLoS Neglected Tropical Diseases 13 (5), e0007231, 2019	52	2019
Patterns of transmitted HIV drug resistance in Europe vary by risk group D Frentz, D van de Vijver, A Abecasis, J Albert, O Hamouda, L Jørgensen, ... PloS one 9 (4), e94495, 2014	49	2014
Limited cross-border infections in patients newly diagnosed with HIV in Europe D Frentz, AMJ Wensing, J Albert, D Paraskevis, AB Abecasis, O Hamouda, ... Retrovirology 10, 1-10, 2013	49	2013
The impact of HIV-1 within-host evolution on transmission dynamics K Theys, P Libin, AC Pineda-Pena, A Nowe, AM Vandamme, AB Abecasis Current opinion in virology 28, 92-101, 2018	48	2018
HIV-1 subtype is an independent predictor of reverse transcriptase mutation K65R in HIV-1 patients treated with combination antiretroviral therapy including tenofovir K Theys, J Vercauteren, J Snoeck, M Zazzi, RJ Camacho, C Torti, ... Antimicrobial agents and chemotherapy 57 (2), 1053-1056, 2013	47	2013
Negeviruses found in multiple species of mosquitoes from southern Portugal: isolation, genetic diversity, and replication in insect cell culture S Carapeta, B do Bem, J McGuinness, A Esteves, A Abecasis, Â Lopes, ... Virology 483, 318-328, 2015	39	2015
Transmission of HIV-2 P Gomes, A Abecasis, M Almeida, R Camacho, K Mansinho The Lancet Infectious Diseases 3 (11), 683-684, 2003	39	2003

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