| Temporal Global Changes in Gene Expression during Temperature Transition in Yersinia pestis VL Motin, AM Georgescu, JP Fitch, PP Gu, DO Nelson, SL Mabery, ... Journal of bacteriology 186 (18), 6298-6305, 2004 | 171 | 2004 |
| Genetic Variability of Yersinia pestis Isolates as Predicted by PCR-Based IS100 Genotyping and Analysis of Structural Genes Encoding Glycerol-3-Phosphate … VL Motin, AM Georgescu, JM Elliott, P Hu, PL Worsham, LL Ott, TR Slezak, ... Journal of bacteriology 184 (4), 1019-1027, 2002 | 169 | 2002 |
| Metagenome Fragment Classification Using 𝑁-Mer Frequency Profiles G Rosen, E Garbarine, D Caseiro, R Polikar, B Sokhansanj Advances in bioinformatics 2008, 2008 | 133 | 2008 |
| A quantitative model of human DNA base excision repair. I. Mechanistic insights BA Sokhansanj, GR Rodrigue, JP Fitch, DMW III Nucleic acids research 30 (8), 1817-1825, 2002 | 105 | 2002 |
| Genomic engineering: moving beyond DNA sequence to function JP Fitch, B Sokhansanj Proceedings of the IEEE 88 (12), 1949-1971, 2000 | 85 | 2000 |
| Linear fuzzy gene network models obtained from microarray data by exhaustive search BA Sokhansanj, PJ Fitch, JN Quong, AA Quong BMC bioinformatics 5 (1), 1-12, 2004 | 66 | 2004 |
| Systems approaches to the networks of aging A Kriete, BA Sokhansanj, DL Coppock, GB West Ageing research reviews 5 (4), 434-448, 2006 | 64 | 2006 |
| Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization Z Zhao, BA Sokhansanj, C Malhotra, K Zheng, GL Rosen PLoS computational biology 16 (9), e1008269, 2020 | 55 | 2020 |
| Signal processing for metagenomics: extracting information from the soup GL Rosen, BA Sokhansanj, R Polikar, MA Bruns, J Russell, E Garbarine, ... Current genomics 10 (7), 493-510, 2009 | 37 | 2009 |
| Estimating the effect of human base excision repair protein variants on the repair of oxidative DNA base damage BA Sokhansanj, DM Wilson III Cancer Epidemiology Biomarkers & Prevention 15 (5), 1000-1008, 2006 | 34 | 2006 |
| Multi-platform investigation of the metabolome in a leptin receptor defective murine model of type 2 diabetes GT Gipson, KS Tatsuoka, RJ Ball, BA Sokhansanj, MK Hansen, TE Ryan, ... Molecular BioSystems 4 (10), 1015-1023, 2008 | 33 | 2008 |
| Amino acid K-mer feature extraction for quantitative antimicrobial resistance (AMR) prediction by machine learning and model interpretation for biological insights T ValizadehAslani, Z Zhao, BA Sokhansanj, GL Rosen Biology 9 (11), 365, 2020 | 29 | 2020 |
| Oxidative DNA damage background estimated by a system model of base excision repair BA Sokhansanj, DM Wilson III Free Radical Biology and Medicine 37 (3), 422-427, 2004 | 29 | 2004 |
| Assignment of MS-based metabolomic datasets via compound interaction pair mapping GT Gipson, KS Tatsuoka, BA Sokhansanj, RJ Ball, SC Connor Metabolomics 4, 94-103, 2008 | 28 | 2008 |
| URC fuzzy modeling and simulation of gene regulation BA Sokhansanj, JP Fitch 2001 Conference Proceedings of the 23rd Annual International Conference of …, 2001 | 23 | 2001 |
| Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network Z Zhao, S Woloszynek, F Agbavor, JC Mell, BA Sokhansanj, GL Rosen PLoS computational biology 17 (9), e1009345, 2021 | 20 | 2021 |
| Engineering human microbiota: influencing cellular and community dynamics for therapeutic applications S Woloszynek, S Pastor, JC Mell, N Nandi, B Sokhansanj, GL Rosen International review of cell and molecular biology 324, 67-124, 2016 | 18 | 2016 |
| Mining, modeling, and evaluation of subnetworks from large biomolecular networks and its comparison study X Hu, M Ng, FX Wu, BA Sokhansanj IEEE Transactions on Information Technology in Biomedicine 13 (2), 184-194, 2009 | 15 | 2009 |
| Accelerated search for biomolecular network models to interpret high-throughput experimental data S Datta, BA Sokhansanj BMC bioinformatics 8, 1-13, 2007 | 15 | 2007 |
| Discovering the unknown: improving detection of novel species and genera from short reads GL Rosen, R Polikar, DA Caseiro, SD Essinger, BA Sokhansanj Journal of Biomedicine and Biotechnology 2011, 2011 | 14 | 2011 |
Gail RosenProfessor of ECE, Drexel UniversityVerified email at ece.drexel.edu
